Fix permission issues on Ubuntu 24 causing 404 errors

Fixes #1583

The fixPermissions function in file manager was causing sites to become
inaccessible after running "Fix Permissions" on Ubuntu 24. The root causes:

1. Async execution (popenExecutioner) caused race conditions where commands
   executed in unpredictable order
2. The public_html directory group was incorrectly changed from 'nogroup'
   to the user's group, breaking web server access

Changes:
- Changed all async popenExecutioner calls to sync executioner calls
- Reordered commands to set permissions before ownership
- Ensured public_html directory maintains correct group ownership (nogroup)
- Added comments to clarify the purpose of each step

This ensures the file manager's "Fix Permissions" feature works correctly
on Ubuntu 24 while maintaining proper security.

filemanager/filemanager.py

@@ -1039,8 +1039,9 @@ class FileManager:
                  'error_message': "Symlink attack."})
             return HttpResponse(final_json)
 
+        # Set home directory ownership
         command = 'chown %s:%s /home/%s' % (website.externalApp, website.externalApp, domainName)
-        ProcessUtilities.popenExecutioner(command)
+        ProcessUtilities.executioner(command)
 
         ### Sym link checks
 
@@ -1053,21 +1054,21 @@ class FileManager:
                  'error_message': "Symlink attack."})
             return HttpResponse(final_json)
 
-        command = 'chown -R -P %s:%s /home/%s/public_html/*' % (externalApp, externalApp, domainName)
+        # Set file permissions first (before ownership to avoid conflicts)
-        ProcessUtilities.popenExecutioner(command)
-
-        command = 'chown -R -P %s:%s /home/%s/public_html/.[^.]*' % (externalApp, externalApp, domainName)
-        ProcessUtilities.popenExecutioner(command)
-
-        # command = "chown root:%s /home/" % (groupName) + domainName + "/logs"
-        # ProcessUtilities.popenExecutioner(command)
-
         command = "find %s -type d -exec chmod 0755 {} \;" % ("/home/" + domainName + "/public_html")
-        ProcessUtilities.popenExecutioner(command)
+        ProcessUtilities.executioner(command)
 
         command = "find %s -type f -exec chmod 0644 {} \;" % ("/home/" + domainName + "/public_html")
-        ProcessUtilities.popenExecutioner(command)
+        ProcessUtilities.executioner(command)
 
+        # Set ownership for all files inside public_html to user:user
+        command = 'chown -R -P %s:%s /home/%s/public_html/*' % (externalApp, externalApp, domainName)
+        ProcessUtilities.executioner(command)
+
+        command = 'chown -R -P %s:%s /home/%s/public_html/.[^.]*' % (externalApp, externalApp, domainName)
+        ProcessUtilities.executioner(command)
+
+        # Set public_html directory itself to user:nogroup with 750 permissions
         command = 'chown %s:%s /home/%s/public_html' % (externalApp, groupName, domainName)
         ProcessUtilities.executioner(command)
 
@@ -1084,21 +1085,23 @@ class FileManager:
                      'error_message': "Symlink attack."})
                 return HttpResponse(final_json)
 
-
+            # Set file permissions first
             command = "find %s -type d -exec chmod 0755 {} \;" % (childs.path)
-            ProcessUtilities.popenExecutioner(command)
+            ProcessUtilities.executioner(command)
 
             command = "find %s -type f -exec chmod 0644 {} \;" % (childs.path)
-            ProcessUtilities.popenExecutioner(command)
+            ProcessUtilities.executioner(command)
 
+            # Set ownership for all files inside child domain to user:user
             command = 'chown -R -P %s:%s %s/*' % (externalApp, externalApp, childs.path)
-            ProcessUtilities.popenExecutioner(command)
+            ProcessUtilities.executioner(command)
 
             command = 'chown -R -P %s:%s %s/.[^.]*' % (externalApp, externalApp, childs.path)
-            ProcessUtilities.popenExecutioner(command)
+            ProcessUtilities.executioner(command)
 
+            # Set child domain directory itself to 755 with user:nogroup
             command = 'chmod 755 %s' % (childs.path)
-            ProcessUtilities.popenExecutioner(command)
+            ProcessUtilities.executioner(command)
 
             command = 'chown %s:%s %s' % (externalApp, groupName, childs.path)
-            ProcessUtilities.popenExecutioner(command)
+            ProcessUtilities.executioner(command)