import java.io.*; import java.util.Scanner; public class ReadFastaFile { public static void main(String[] args) throws FileNotFoundException { boolean first = true; try (Scanner sc = new Scanner(new File("test.fasta"))) { while (sc.hasNextLine()) { String line = sc.nextLine().trim(); if (line.charAt(0) == '>') { if (first) first = false; else System.out.println(); System.out.printf("%s: ", line.substring(1)); } else { System.out.print(line); } } } System.out.println(); } }