import java.util.HashMap;
import java.util.Map;

public class orderedSequence {
    public static void main(String[] args) {
        Sequence gene = new Sequence("CGTAAAAAATTACAACGTCCTTTGGCTATCTCTTAAACTCCTGCTAAATGCTCGTGCTTTCCAATTATGTAAGCGTTCCGAGACGGGGTGGTCGATTCTGAGGACAAAGGTCAAGATGGAGCGCATCGAACGCAATAAGGATCATTTGATGGGACGTTTCGTCGACAAAGTCTTGTTTCGAGAGTAACGGCTACCGTCTTCGATTCTGCTTATAACACTATGTTCTTATGAAATGGATGTTCTGAGTTGGTCAGTCCCAATGTGCGGGGTTTCTTTTAGTACGTCGGGAGTGGTATTATATTTAATTTTTCTATATAGCGATCTGTATTTAAGCAATTCATTTAGGTTATCGCCGCGATGCTCGGTTCGGACCGCCAAGCATCTGGCTCCACTGCTAGTGTCCTAAATTTGAATGGCAAACACAAATAAGATTTAGCAATTCGTGTAGACGACCGGGGACTTGCATGATGGGAGCAGCTTTGTTAAACTACGAACGTAAT");
        gene.runSequence();
    }
}

/** Separate class for defining behaviors */
public class Sequence {

    private final String seq;

    public Sequence(String sq) {
        this.seq = sq;
    }

    /** print the organized structure of the sequence */
    public void prettyPrint() {
        System.out.println("Sequence:");
        int i = 0;
        for ( ; i < seq.length() - 50 ; i += 50) {
            System.out.printf("%5s : %s\n", i + 50, seq.substring(i, i + 50));
        }
        System.out.printf("%5s : %s\n", seq.length(), seq.substring(i));
    }

    /** display a base vs. frequency chart */
    public void displayCount() {
        Map<Character, Integer> counter = new HashMap<>();
        for (int i = 0 ; i < seq.length() ; ++i) {
            counter.merge(seq.charAt(i), 1, Integer::sum);
        }

        System.out.println("Base vs. Count:");
        counter.forEach(
            key, value -> System.out.printf("%5s : %s\n", key, value));
        System.out.printf("%5s: %s\n", "SUM", seq.length());
    }

    public void runSequence() {
        this.prettyPrint();
        this.displayCount();
    }
}